16S/18S/ITS Microbiome Analysis
16S/18S/ITS Microbiome Service
What is the 16S/18S/ITS Microbiome Analysis Service?
The 16S/18S/ITS Microbiome Analysis identifies various microbiota/eukaryote/fungi (e.g. composition and distribution) in the collected samples to generate a customized microbiome profile.
Microbiome Type | Areas of Analysis |
|---|---|
Archaea, Bacteria | 16S V1V2 |
16S V3V4 | |
16S V4 | |
Eukaryote
| 18S V3V4 |
18S V9 | |
Fungi
| ITS1
|
ITS2
|
(※ For analysis on the ITS2 region, items marked with * are excluded from the results.)
1. NGS QC Data
2. Taxonomic Distribution
– Bar plots for relative ratio of microbes in phylum, class, order, family, genus, and species level
3. Alpha Diversity
– Chao1, Observed Species, Shannon Index, Simpson Index, PD Whole Tree*
4. Rarefaction Curves
– Chao1, Observed Species, Shannon Index, Simpson Index, PD Whole Tree*
5. Beta Diversity
– Bray-Curtis*, Unweighted Unifrac*, Weighted Unifrac*
6. UPGMA Trees
– Bray-Curtis*, Unweighted Unifrac*, Weighted Unifrac*
Additional Analysis Items
1. LEfSe 2. XOR 3. PICRUSt
Experimental Data
